IGVFFI3970DVPI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6017DONZ(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP021_G5_P068_L002_I2

md5sum

042412b37224b28522f9bc4c0671ba7d

Content MD5sum

fe5e1325a86bc8f8d557e87367acbc79

File Size

343 MB

Submitted File Name

Multiome_RNA_RP021_G5_L005_P068_S3_L002_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257GYLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

53323421

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3191ZJBV

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 80 years) substantia nigra tissue associated with Parkinson's disease; ... and 14 more samples