IGVFFI3965MSQX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3028RZBD(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G7_P055_L004_I1

md5sum

81a0253c69df24f5b5e29db292a4a265

Content MD5sum

f834d39f15cbbe1bd0c2d3ea785c00dd

File Size

496 MB

Submitted File Name

Multiome_ATAC_RP005_G7_L007_P055_S3_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

70429763

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3222RGNB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples