IGVFFI3961HSSL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9100VWOR(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X049_G4_P065_L007_I1

md5sum

3aa243f60b80fdb134d11f39e88b7601

Content MD5sum

0210d1f35e0a0a96e38d5d2a241e4521

File Size

545 MB

Submitted File Name

Multiome_ATAC_X049_G4_L004_P065_S26_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

70392005

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1273OSPI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 63 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 8 more samples