IGVFFI3938RSXN

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI3938RSXN/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3938RSXN",
    "aliases": [
        "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_11AMDox_6_c_TTACTCAG_L001_R1_001.fastq.gz"
    ],
    "assay_titles": [
        "Perturb-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "content_md5sum": "9a0c30f963dc4d324b91c23bf9bfadeb",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-12-20T22:34:04.118653+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS2630GWQK/",
        "accession": "IGVFDS2630GWQK",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM3814HZQI/",
                "accession": "IGVFSM3814HZQI",
                "classifications": [
                    "cell line"
                ],
                "modifications": [
                    {
                        "@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
                        "modality": "interference",
                        "status": "released",
                        "summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
                    }
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000753/",
                        "status": "released",
                        "term_name": "TeloHAEC"
                    }
                ],
                "status": "preview",
                "summary": "TeloHAEC cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
                "taxa": "Homo sapiens"
            }
        ],
        "status": "preview",
        "summary": "CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci"
    },
    "file_size": 1951028523,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI3938RSXN/@@download/IGVFFI3938RSXN.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "loci_list_for": [],
    "maximum_read_length": 32,
    "md5sum": "7a0384b327b18af520b27e87cee42448",
    "mean_read_length": 32,
    "minimum_read_length": 32,
    "read_count": 88772617,
    "s3_uri": "s3://igvf-files/2023/12/20/8d806780-4581-4e1c-997d-37828216e354/IGVFFI3938RSXN.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008637/",
        "status": "released",
        "term_name": "Illumina NovaSeq 6000"
    },
    "sequencing_run": 3,
    "status": "preview",
    "submitted_by": {
        "@id": "/users/05fa0dc9-0e33-427c-9d1f-82393edc4a03/",
        "title": "Helen Kang"
    },
    "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_11AMDox_6_c_TTACTCAG_L001_R1_001.fastq.gz",
    "summary": "R1 reads from sequencing run 3",
    "upload_status": "validated",
    "uuid": "8d806780-4581-4e1c-997d-37828216e354"
}