IGVFFI3936XRQW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1686QXQO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G8_P059_L006_R1

md5sum

6156b96a36079b58b7937af4041402e5

Content MD5sum

c176409e36d147170c45b86ba644c037

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_RP012_G8_L008_P059_S88_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65783003

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9167CXIN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples