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INDEXED
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SequenceFile
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IGVFFI3928DRTC
IGVFFI3928DRTC
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS3136TLZY
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP006_G2_P056_L007_R2
md5sum
4ef22e4b2afe00c9ee94a8907d18550f
Content MD5sum
9d6f0c578801e3246b181526b213da34
File Size
2.4 GB
Submitted File Name
Multiome_RNA_RP006_G2_L002_P056_S81_L007_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JHVLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
55239463
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5801EHME
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples