IGVFFI3918UPES

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS2600XYHD(cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
gary-hon:LW283C_1_I2
md5sum
6999660d8a727945285431e00bee2f8a
Content MD5sum
413310d4986b9c1e07653c91676a540d
File Size
106 MB
Submitted File Name
/project/GCRB/Hon_lab/shared/data/sequencing_data/2023/2023-10-05-McDermott-NextSeq.10X/2023-10-05/outs/fastq_path/AAC7VLGHV/LW283C_S7_L001_I2_001.fastq.gz
Checkfiles Version

Sequencing Details

Sequencing Platform
Sequencing Run
1
Flowcell ID
AAC7VLGHV
Lane
1
Illumina Read Type
I2
Average Read Length
10
Read Count
12583715

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW283), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Files Derived From This File

2 items
pkl
raw feature barcode matrix
cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
540 MB
validated
hdf5
filtered feature barcode matrix
cell by UMI count in filtered feature barcode matrix
Gary Hon, UT
508 MB
validated

Attribution