IGVFFI3915GGSS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4617MHLV(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G6_P059_L006_R3

md5sum

d5bbd5a02f6c159b69efbcb42d2dd9da

Content MD5sum

72484dbf9848a5cddb79324d73ab1acf

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP010_G6_L006_P059_S70_L006_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55177702

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2055PXMF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples