IGVFFI3915BFIM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7541UESD(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G5_P043_L007_R1

md5sum

d95f792ae2eba1c9e70622617a54c6b0

Content MD5sum

b5c140fac752c0076d385798fb855417

File Size

2.4 GB

Submitted File Name

Multiome_ATAC_X043_G5_L005_P043_S31_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

78429090

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7586ZAET

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples