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INDEXED
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SequenceFile
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IGVFFI3909JQAB
IGVFFI3909JQAB
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4799JPXW
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X043_G6_P044_L007_I2
md5sum
dc04fd6193aab93837ad389529c427f6
Content MD5sum
dfd927af4668586a61a9555b4795328b
File Size
384 MB
Submitted File Name
Multiome_RNA_X043_G6_L006_P044_S32_L007_I2_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
222YMLLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
68461777
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM1854LWZV
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF