Home

IGVFFI3900KETJ

released
validated
File Set
IGVFDS8192PAOP(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp6_atac_10x3_NGS2_r2
md5sum
b115ca4c3fb95f9f3e143c9149615395
Content MD5sum
4d5d5426e4da81d4329be80814817614
File Size
5.2 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF6_McGinnis/ATAC/FASTQ/ATAC_3_S7_L006_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JH2LT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
24
Read Count
321879147

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
Multiplexed Samples
multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
7.3 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9344ZUUY, IGVFFI3900KETJ, IGVFFI2773UHYP, IGVFFI3700SAVO
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford