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IGVFFI3892BRSH

released
validated
File Set
IGVFDS6721DTCZ(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 257
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2070_R1
bradley-bernstein:SS-LS_257_R1
buenrostro-bernstein:SS-LS_2070_R1
buenrostro-bernstein:SS-LS_257_R1
md5sum
762a4a653d55fbb36adf63b2fe289fe3
Content MD5sum
0f51934737ae2d72262ab1a6e122c852
File Size
1.4 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-199_L1_SS-PKR-132_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
257
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
52944847

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 132)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
5.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
962 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3892BRSH, IGVFFI3335XFSL
Jason Buenrostro, Broad
1.2 KB
validated