IGVFFI3878VCMH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0591ZXQW(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X036_G7_P037_L001_I1

md5sum

20b79c9b8848c33628cb13e23a59715c

Content MD5sum

ba28ff5aa7b86353f5eb8312f6044d21

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_X036_G7_L007_P037_S5_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

242013528

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5231ZGKX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples