IGVFFI3860CPUT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5208BPDO(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G7_P057_L002_I1

md5sum

f9d195902e0215f5016083e5361540d0

Content MD5sum

92edf75c55e2e11a665fc17f6128774b

File Size

294 MB

Submitted File Name

Multiome_ATAC_RP009_G7_L007_P057_S15_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

39925243

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6972ZZKH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples