IGVFFI3853SHJH

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI3853SHJH/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3853SHJH",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_7391_R1"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "2aa677ca72218c4221d6ce20676e73b4",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-03-05T15:51:48.788801+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS9519NBWN/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS9519NBWN",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
39        },
40        "data_use_limitation_summaries": [
41            "no certificate"
42        ],
43        "file_set_type": "experimental data",
44        "samples": [
45            {
46                "@id": "/tissues/IGVFSM6189KRRN/",
47                "@type": [
48                    "Tissue",
49                    "Biosample",
50                    "Sample",
51                    "Item"
52                ],
53                "accession": "IGVFSM6189KRRN",
54                "classifications": [
55                    "tissue"
56                ],
57                "sample_terms": [
58                    {
59                        "@id": "/sample-terms/NTR_0000646/",
60                        "status": "released",
61                        "term_name": "left cerebral cortex"
62                    }
63                ],
64                "status": "released",
65                "summary": "Mus musculus C57BL/6J (female) left cerebral cortex tissue (cellular sub pool: SS-PKR 500)",
66                "taxa": "Mus musculus"
67            }
68        ],
69        "status": "released",
70        "summary": "single-cell ATAC-seq (SHARE-seq)"
71    },
72    "file_size": 5285595830,
73    "flowcell_id": "22KFLYLT3",
74    "gene_list_for": [],
75    "href": "/sequence-files/IGVFFI3853SHJH/@@download/IGVFFI3853SHJH.fastq.gz",
76    "illumina_read_type": "R1",
77    "input_file_for": [
78        "/tabular-files/IGVFFI3982WMSF/",
79        "/alignment-files/IGVFFI3793CBCL/"
80    ],
81    "integrated_in": [],
82    "lab": {
83        "@id": "/labs/jason-buenrostro/",
84        "title": "Jason Buenrostro, Broad"
85    },
86    "loci_list_for": [],
87    "maximum_read_length": 100,
88    "md5sum": "70582d80e486b0638059e790d60d70bb",
89    "mean_read_length": 100,
90    "minimum_read_length": 100,
91    "quality_metrics": [],
92    "read_count": 136660103,
93    "read_names": [
94        "Read 1"
95    ],
96    "release_timestamp": "2025-03-28T21:21:57.079443+00:00",
97    "s3_uri": "s3://igvf-files/2025/03/05/a4ccfecb-37c8-445a-b596-514aa53e7f02/IGVFFI3853SHJH.fastq.gz",
98    "schema_version": "15",
99    "seqspecs": [
100        "/configuration-files/IGVFFI4352WWYD/"
101    ],
102    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
103    "sequencing_platform": {
104        "@id": "/platform-terms/EFO_0022840/",
105        "status": "released",
106        "term_name": "Illumina NovaSeq X"
107    },
108    "sequencing_run": 7391,
109    "status": "released",
110    "submitted_by": {
111        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
112        "title": "Siddarth Wekhande"
113    },
114    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-1949_L2_SS-PKR-500_SS-V1-RIGHT-HALF_R1.fastq.gz",
115    "summary": "R1 reads from sequencing run 7391",
116    "upload_status": "validated",
117    "uuid": "a4ccfecb-37c8-445a-b596-514aa53e7f02"
118}