IGVFFI3845WLSQ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI3845WLSQ/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3845WLSQ",
10    "aliases": [
11        "tim-reddy:starr-seq-rna-fastq-k562-P007-R2"
12    ],
13    "assay_titles": [
14        "SUPERSTARR"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012053/",
19        "component": "functional characterization"
20    },
21    "checkfiles_version": "v14",
22    "content_md5sum": "5519896aba7d58efd7b79e852b599006",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-02-06T04:03:19.208462+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS4391GDQX/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS4391GDQX",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002041/",
38            "term_name": "self-transcribing active regulatory region sequencing assay"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/in-vitro-systems/IGVFSM5388RGJI/",
44                "@type": [
45                    "InVitroSystem",
46                    "Biosample",
47                    "Sample",
48                    "Item"
49                ],
50                "accession": "IGVFSM5388RGJI",
51                "classifications": [
52                    "cell line"
53                ],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/EFO_0002067/",
57                        "status": "released",
58                        "term_name": "K562"
59                    }
60                ],
61                "status": "released",
62                "summary": "Homo sapiens (female) K562 cell line transfected with a reporter library",
63                "taxa": "Homo sapiens"
64            }
65        ],
66        "status": "released",
67        "summary": "SUPERSTARR integrating a reporter library targeting random selections genome-wide"
68    },
69    "file_size": 16856261598,
70    "flowcell_id": "AAFJG3FM5",
71    "gene_list_for": [],
72    "href": "/sequence-files/IGVFFI3845WLSQ/@@download/IGVFFI3845WLSQ.fastq.gz",
73    "illumina_read_type": "R2",
74    "input_file_for": [
75        "/alignment-files/IGVFFI3226VPNC/"
76    ],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/tim-reddy/",
80        "title": "Tim Reddy, Duke"
81    },
82    "lane": 1,
83    "loci_list_for": [],
84    "maximum_read_length": 301,
85    "md5sum": "ccfc2f0815bf8b441f40c560b03da349",
86    "mean_read_length": 301,
87    "minimum_read_length": 301,
88    "quality_metrics": [],
89    "read_count": 116795392,
90    "read_names": [
91        "Read 2"
92    ],
93    "release_timestamp": "2025-04-09T16:40:14.183958+00:00",
94    "s3_uri": "s3://igvf-files/2025/02/06/19c55d2c-2bf3-4c2c-a21f-932ab8dfc2e8/IGVFFI3845WLSQ.fastq.gz",
95    "schema_version": "15",
96    "seqspecs": [],
97    "sequencing_kit": "NextSeq 2000 P3 XLEAP-SBS Reagent Kit",
98    "sequencing_platform": {
99        "@id": "/platform-terms/EFO_0010963/",
100        "status": "released",
101        "term_name": "Illumina NextSeq 2000"
102    },
103    "sequencing_run": 1,
104    "status": "released",
105    "submitted_by": {
106        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
107        "title": "Alejandro Barrera"
108    },
109    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.rna.pool7.R2.fastq.gz",
110    "summary": "R2 reads from sequencing run 1",
111    "upload_status": "validated",
112    "uuid": "19c55d2c-2bf3-4c2c-a21f-932ab8dfc2e8"
113}