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INDEXED
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SequenceFile
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IGVFFI3829ZBKB
IGVFFI3829ZBKB
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS8894MIXR
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X042_G6_P044_L005_R1
md5sum
d982813057cfc352a1a662ecec9c9a00
Content MD5sum
da1ade5569b56d7866685418eb68bbe0
File Size
1.3 GB
Submitted File Name
Multiome_RNA_X042_G6_L006_P044_S24_L005_R1_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
222YMLLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
65536727
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM1167MABH
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF