IGVFFI3825PEBT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1470SNNV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X017_G5_P015_L003_R1

md5sum

7be6f55dc7bc87530835b3e1f8f99b84

Content MD5sum

e90b9f29ac14a2651531a8aaa4d5e8e8

File Size

6.6 GB

Submitted File Name

Multiome_ATAC_X017_G5_L005_P015_S27_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

212804399

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4314JKFX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples