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INDEXED
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SequenceFile
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IGVFFI3822QLXB
IGVFFI3822QLXB
preview
validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0624REZE
(single-nucleus ATAC-seq (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_ATAC_X043_G8_P043_L006_R2
md5sum
c92de5c42225d0a70233c8a1afd4a0ac
Content MD5sum
734a181146c44ac6579f845614f96c3b
File Size
876 MB
Submitted File Name
Multiome_ATAC_X043_G8_L008_P043_S34_L006_R2_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJTLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
24
Read Count
50591554
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9265WOCK
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF