IGVFFI3822QLXB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0624REZE(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G8_P043_L006_R2

md5sum

c92de5c42225d0a70233c8a1afd4a0ac

Content MD5sum

734a181146c44ac6579f845614f96c3b

File Size

876 MB

Submitted File Name

Multiome_ATAC_X043_G8_L008_P043_S34_L006_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

50591554

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9265WOCK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples