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INDEXED
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SequenceFile
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IGVFFI3812WGDP
IGVFFI3812WGDP
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6114MEFE
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X052_G2_P070_L005_R2
md5sum
17d26f7cb42959a524d2010ddfecd51f
Content MD5sum
02295bf2411a96c02f20d155d13eb682
File Size
14 GB
Submitted File Name
Multiome_RNA_X052_G2_L002_P070_S38_L005_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19RTCA4LE
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
151
Read Count
209612472
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0643NOLO
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples