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IGVFFI3810ZQMP

released
validated
File Set
IGVFDS7173XOSJ(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp13_multi_10x4_NGS2_r1
md5sum
bc3dd479dc63f5191b4784446b529588
Content MD5sum
88ed212013d3712e88c8965cc9adc8c7
File Size
149 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF13_McGinnis/MULTI/FASTQ/igvf13_s4_multi_S8_L002_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22HHHWLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
7156405

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
65 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3019AOXD, IGVFFI3810ZQMP, IGVFFI0480RGVM, IGVFFI4989HLMM
Ansuman Satpathy, Stanford
1.3 KB
validated