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INDEXED
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SequenceFile
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IGVFFI3803WSFQ
IGVFFI3803WSFQ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS3371UYOY
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP018_G2_P064_L004_I1
md5sum
fa181ed5b141e12ee0c12f41b14638aa
Content MD5sum
4264567b4148e9e44493805e47a4dba2
File Size
645 MB
Submitted File Name
Multiome_RNA_RP018_G2_L002_P064_S10_L004_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223H55LT3
Lane
4
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
89499457
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9675WPZF
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples