IGVFFI3791TKEW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0007PGZB(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP010_G4_P058_L003_R2

md5sum

97f940fa18392fb88db35753a0c7cc47

Content MD5sum

3bef6f9decebe8b518fb958a87da11e7

File Size

3.2 GB

Submitted File Name

Multiome_RNA_RP010_G4_L004_P058_S20_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

76289294

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3126EQPY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples