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IGVFFI3780QGTX

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4940ELQK(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
R2 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
gary-hon:LW272_8_R2
md5sum
d1f4808311f72b3973a15807a6c89ddf
Content MD5sum
c9dc437b486ea4cb41bac16b1d81a424
File Size
11 GB
Submitted File Name
/project/GCRB/Hon_lab/shared/data/sequencing_data/2023/2023-10-25-McDermott-NovaSeq.lane8.10X/10X//LW272_S4_L008_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
2
Flowcell ID
22FJH2LT3
Lane
8
Illumina Read Type
R2
Average Read Length
151
Read Count
152846412

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW272), female, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Files Derived From This File

2 items
hdf5
filtered feature barcode matrix
cell by UMI count in filtered feature barcode matrix
Gary Hon, UT
426 MB
validated
pkl
raw feature barcode matrix
cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
1.4 GB
validated

Attribution

Award
HG011996
Principal Investigator(s)
Contact P.I.
Gary Hon
Lab
Gary Hon, UT