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INDEXED
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SequenceFile
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IGVFFI3734EJEW
IGVFFI3734EJEW
released
validated
Json view
File Set
IGVFDS3991RWMW
(single-cell ATAC-seq (SHARE-seq))
Summary
R2 reads from sequencing run 2399
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2399_R2
buenrostro-bernstein:SS-LS_2399_R2
md5sum
b430328bc4419adc22985c7e0a7b4585
Content MD5sum
3e06dd4549b6185f6c56a71341b58f19
File Size
768 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-67_L2_SS-PKR-6_SS-V2-PLATE2-1st-THIRD_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
2399
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
16826558
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM1036KMAA
PrimaryCell
bone marrow
Homo sapiens (male, 49 years) bone marrow cell (cellular sub pool: SS-PKR 6)
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4279WJVY
tsv
fragments
GRCh38 fragments
Jason Buenrostro, Broad
13 GB
validated