IGVFFI3722EHRA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6834GMBS(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP010_G1_P060_L008_I2

md5sum

3a66daa5fb2fad1041f3ef718b3b40d4

Content MD5sum

37fa86661d275c063158922cf7cb3c7e

File Size

293 MB

Submitted File Name

Multiome_RNA_RP010_G1_L001_P060_S21_L008_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

51167380

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5451ZFAE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples