IGVFFI3715SGQV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4409BIXE(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X029_G7_P029_L001_R3

md5sum

28c02008769f8116dde1ec96da13597a

Content MD5sum

4d3725a308c2618a6af6ea4701647abf

File Size

15 GB

Submitted File Name

Multiome_ATAC_X029_G7_L007_P029_S5_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

286120623

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7778OPXA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples