IGVFFI3711BDZQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9856KSFL(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X011_G8_P009_L001_R3

md5sum

fe55bad2bad47201ce79c0ade3c3dd28

Content MD5sum

984f60b89b2489d3d7d11037892c74cc

File Size

5.3 GB

Submitted File Name

Multiome_ATAC_X011_G8_L008_P009_S10_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

161532990

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5882JKZW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 81 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples