IGVFFI3699PKGX

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI3699PKGX/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3699PKGX",
    "aliases": [
        "charles-gersbach:measurement-set-ccrispra-region3-mouse-hl1-targeted-hicar-rep3-R2"
    ],
    "assay_titles": [
        "HiCAR"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012053/",
        "component": "functional characterization"
    },
    "content_md5sum": "353b167563efda91b4c90d5d1e84b0af",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-10-23T19:29:58.781219+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1873QGHK/",
        "accession": "IGVFDS1873QGHK",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM5017HPIL/",
                "accession": "IGVFSM5017HPIL",
                "classifications": [
                    "cell line"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0022835/",
                        "status": "released",
                        "term_name": "HL-1"
                    }
                ],
                "status": "released",
                "summary": "HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library",
                "taxa": "Mus musculus"
            }
        ],
        "status": "released",
        "summary": "CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus"
    },
    "file_size": 1097719082,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI3699PKGX/@@download/IGVFFI3699PKGX.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [
        "/matrix-files/IGVFFI2377NFOC/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/charles-gersbach/",
        "title": "Charles Gersbach, Duke"
    },
    "loci_list_for": [],
    "maximum_read_length": 100,
    "md5sum": "28dd913673a26e0559d43d1479f764a4",
    "mean_read_length": 100,
    "minimum_read_length": 100,
    "read_count": 19374369,
    "release_timestamp": "2024-12-13T19:43:28.301167+00:00",
    "s3_uri": "s3://igvf-files/2024/10/23/56f48a90-6d09-4a49-b403-0b9d7ebe195b/IGVFFI3699PKGX.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "NextSeq 1000/2000 P2 Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0010963/",
        "status": "released",
        "term_name": "Illumina NextSeq 2000"
    },
    "sequencing_run": 4,
    "status": "released",
    "submitted_by": {
        "@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
        "title": "Ruhi Rai"
    },
    "submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/fastq/crispra_mouse/crispra_hicar_mouse_fastq/HL_1_TA446_3_noET1_ds.ddd23fd62a0943278602f69ba9bcacfe/HL_1_TA446_3_noET1_S16_L001_R2_001.fastq.gz",
    "summary": "R2 reads from sequencing run 4",
    "upload_status": "validated",
    "uuid": "56f48a90-6d09-4a49-b403-0b9d7ebe195b"
}