IGVFFI3696UEMA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8483WUQH(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP010_G3_P058_L001_I1

md5sum

fdb11e2aa9c496d9ef32d4b88d92d830

Content MD5sum

c6d61d10cc1b72e3e7676ac3b4cce59a

File Size

488 MB

Submitted File Name

Multiome_RNA_RP010_G3_L003_P058_S42_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

73075693

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7086NABQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples