IGVFFI3692OTDB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1740NBJU(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP008_G7_P057_L001_I1

md5sum

c4ca089691dc7c2e84299aea19885674

Content MD5sum

8047688663039baf5bc1efa2fb63408e

File Size

278 MB

Submitted File Name

Multiome_ATAC_RP008_G7_L007_P057_S7_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

35031256

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8027AHHD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples