IGVFFI3686KAHW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5655FKDO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X038_G2_P039_L003_R1

md5sum

9a6071af612060e6af5b34f86a797f92

Content MD5sum

83daf423175c1d8ad2b0339ba82c6f4f

File Size

4.8 GB

Submitted File Name

Multiome_ATAC_X038_G2_L002_P039_S16_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

152875940

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3087OOJP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples