IGVFFI3680LOGF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6561ZEIK(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G3_P057_L003_R3

md5sum

d6176f6982bd633b2ec6077dd52d4cb9

Content MD5sum

0397bcb493fa33b9a50ed9ae76ebac0f

File Size

14 GB

Submitted File Name

Multiome_ATAC_RP009_G3_L003_P057_S11_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

478497702

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6201VKVB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples