IGVFFI3674YEKI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9744BEYW(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X037_G3_P037_L001_R1

md5sum

3dd815cbc891bc15835a24b12bf43bf7

Content MD5sum

9d269536c2c2414df750d77eba61bf31

File Size

4.5 GB

Submitted File Name

Multiome_ATAC_X037_G3_L003_P037_S9_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

138777695

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9035SCIQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples