IGVFFI3656YCPP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7306JAVN(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP023_G3_P067_L003_R1

md5sum

c0926451f334f55fbfbc3913356c1c6a

Content MD5sum

0adabdf0d9c6db7659b15b02b5bdca26

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_RP023_G3_L003_P067_S15_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

60765958

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4613OXKG

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 52 years) posterior cingulate gyrus tissue; Homo sapiens (male, 87 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples