IGVFFI3655MCWA

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI3655MCWA/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3655MCWA",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_1062_R2"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "e3c92cb7ad32465582cfa709347149c3",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2024-08-20T15:13:38.236954+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS0387PFFN/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS0387PFFN",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/in-vitro-systems/IGVFSM6917PRUY/",
44                "@type": [
45                    "InVitroSystem",
46                    "Biosample",
47                    "Sample",
48                    "Item"
49                ],
50                "accession": "IGVFSM6917PRUY",
51                "classifications": [
52                    "cell line",
53                    "pooled cell specimen"
54                ],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/EFO_0004905/",
58                        "status": "released",
59                        "term_name": "induced pluripotent stem cell"
60                    }
61                ],
62                "status": "released",
63                "summary": "Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 179)",
64                "taxa": "Homo sapiens"
65            }
66        ],
67        "status": "released",
68        "summary": "single-cell ATAC-seq (SHARE-seq)"
69    },
70    "file_size": 486099532,
71    "flowcell_id": "22773CLT3",
72    "gene_list_for": [],
73    "href": "/sequence-files/IGVFFI3655MCWA/@@download/IGVFFI3655MCWA.fastq.gz",
74    "illumina_read_type": "R2",
75    "input_file_for": [],
76    "integrated_in": [],
77    "lab": {
78        "@id": "/labs/jason-buenrostro/",
79        "title": "Jason Buenrostro, Broad"
80    },
81    "loci_list_for": [],
82    "maximum_read_length": 50,
83    "md5sum": "ded00902bf4fff1c8ecbf6677d53116f",
84    "mean_read_length": 50,
85    "minimum_read_length": 50,
86    "quality_metrics": [],
87    "read_count": 18738587,
88    "read_names": [
89        "Read 2"
90    ],
91    "release_timestamp": "2025-04-10T21:13:32.704513+00:00",
92    "s3_uri": "s3://igvf-restricted-files/2024/08/20/ccb2104b-96c7-4923-bb03-8631411e7834/IGVFFI3655MCWA.fastq.gz",
93    "schema_version": "15",
94    "seqspecs": [
95        "/configuration-files/IGVFFI7467KMCI/"
96    ],
97    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
98    "sequencing_platform": {
99        "@id": "/platform-terms/EFO_0022840/",
100        "status": "released",
101        "term_name": "Illumina NovaSeq X"
102    },
103    "sequencing_run": 1062,
104    "status": "released",
105    "submitted_by": {
106        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
107        "title": "Siddarth Wekhande"
108    },
109    "submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/9b6c2a66-3aa3-414f-963d-9bc35486ba39/call-create_fastq_barcode/shard-8/SS-CoPA-949_L4_SS-PKR-179_SS-V1-1st-THIRD_R2.R2.fastq.gz",
110    "summary": "R2 reads from sequencing run 1062",
111    "upload_status": "validated",
112    "uuid": "ccb2104b-96c7-4923-bb03-8631411e7834"
113}