IGVFFI3654JRGP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5733DNRB(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G7_P041_L002_R2

md5sum

046386b748d1332bc128f3943b58aa78

Content MD5sum

10d14f7053077694c649f73c005f048c

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_X040_G7_L007_P041_S9_L002_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

90829380

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3718ZLPR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples