IGVFFI3638PUVG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7068ROMA(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G5_P059_L005_R3

md5sum

31907f7978e5880c8540af881289a5ba

Content MD5sum

dc01e747bf50d656e7c6df62922fccba

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_RP012_G5_L005_P059_S85_L005_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

66847772

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0752KTLR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples