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IGVFFI3630LZMZ

released
validated
File Set
IGVFDS8078FJZR(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 64
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_1980_R1
bradley-bernstein:SS-LS_64_R1
buenrostro-bernstein:SS-LS_1980_R1
buenrostro-bernstein:SS-LS_64_R1
md5sum
4dde0b7e2ef397ab8c948b72def38991
Content MD5sum
c5e40e2ccf956b57f56287674ec0d753
File Size
357 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-133_L1_SS-PKR-129_SS-V1-LEFT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
64
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
13429587

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
367 MB
validated
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.2 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3630LZMZ, IGVFFI0934YZGH
Jason Buenrostro, Broad
1.2 KB
validated