IGVFFI3626JLET

released
validated
{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI3626JLET/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3626JLET",
    "aliases": [
        "jay-shendure:scATAC_mEBs_rep1_day21_10XlaneB_R1"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "content_md5sum": "fa5ab2a29057f81e0516cf3e834f607e",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-12-09T00:57:37.781405+00:00",
    "file_format": "fastq",
    "file_set": "/measurement-sets/IGVFDS6675BDQA/",
    "file_size": 3563896136,
    "flowcell_id": "H3JK7BGXG",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI3626JLET/@@download/IGVFFI3626JLET.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [
        "/signal-files/IGVFFI9468KRLQ/",
        "/signal-files/IGVFFI4530JOCA/",
        "/signal-files/IGVFFI4106YTGZ/",
        "/signal-files/IGVFFI6250RJNE/",
        "/signal-files/IGVFFI4871DVXE/",
        "/signal-files/IGVFFI8400FXRX/",
        "/signal-files/IGVFFI9916JAHE/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jay-shendure/",
        "title": "Jay Shendure, UW"
    },
    "lane": 1,
    "loci_list_for": [],
    "maximum_read_length": 50,
    "md5sum": "8d8c9d73f4d7581fbee1973ffaa88433",
    "mean_read_length": 50,
    "minimum_read_length": 50,
    "read_count": 105803579,
    "release_timestamp": "2024-07-09T20:16:42.200538+00:00",
    "s3_uri": "s3://igvf-files/2023/12/09/8bea07da-e424-4e7f-902f-6aaaf20341a6/IGVFFI3626JLET.fastq.gz",
    "schema_version": "14",
    "seqspecs": [
        "/configuration-files/IGVFFI0221JPNZ/"
    ],
    "sequencing_kit": "NextSeq 500/550 High-Output v2.5 Kit",
    "sequencing_platform": "/platform-terms/EFO_0009173/",
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
        "title": "Beth Martin"
    },
    "submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/scATAC_mEBs/scATAC_mEBs_d21_crispri_rep1_lane_b_R1_001.fastq.gz",
    "summary": "R1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "8bea07da-e424-4e7f-902f-6aaaf20341a6"
}