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INDEXED
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SequenceFile
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IGVFFI3624GOGY
IGVFFI3624GOGY
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0488NVQB
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP015_G3_P062_L005_I2
md5sum
980a5a4eaf950053760a4c17db0e305b
Content MD5sum
d819481872f613227de84f9f5300572f
File Size
498 MB
Submitted File Name
Multiome_RNA_RP015_G3_L003_P062_S39_L005_I2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223H55LT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
65488085
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0903NROD
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples