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IGVFFI3613ESHP

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4024LHFB(single-nucleus ATAC-seq (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
harinder-singh:donor1_Bcell_multiome_ATAC_NGS_day0_2_L002_I1
md5sum
ff73fe3094278ceb180506475d3d467f
Content MD5sum
9e73add5bbca8b9b16979b81729dbfa7
File Size
909 MB
Submitted File Name
/ix/djishnu/peasena/primary_multiome/donor1_upmc/fastqs/scATAC/NP002_01_120222_Singh_Multiome_scATAC_remade_SIN4251A4_S1_L002_I1_001.fastq.gz
Checkfiles Version
v17
Attribution
Harinder Singh, University of Pittsburgh

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Lane
2
Sequencing Kit
NovaSeq 6000 S1 Reagent Kit v1.5
Illumina Read Type
I1
Average Read Length
8
Read Count
129032433

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days

Files Derived From This File

3 items
tsv
fragments
fragments
Harinder Singh, University of Pittsburgh
1.8 GB
validated
hdf5
raw feature barcode matrix
cell by gene expression in raw feature barcode matrix
Harinder Singh, University of Pittsburgh
393 MB
validated
csv
barcode to element mapping
barcode to element mapping
Harinder Singh, University of Pittsburgh
17 MB
validated