IGVFFI3597VWFC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4454OQTQ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X041_G7_P041_L001_R3

md5sum

fedf75552054d4a1da3f26574711aa1b

Content MD5sum

a7f0967cf0bca0e08b8dcb6bc722a575

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_X041_G7_L007_P041_S17_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55053565

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8345ETIT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples