IGVFFI3595NCLD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6183YJRV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G4_P051_L006_R1

md5sum

97ff8b19288b553368aea7857f7fa8cd

Content MD5sum

6573e2d908ad078df8b5559ab7444169

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_RP001_G4_L004_P051_S24_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

72112530

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7329LEXT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples