IGVFFI3590WHKB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8957DHSL(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G6_P057_L002_I1

md5sum

055f789f56c6bed81f8bb4b1c1346038

Content MD5sum

486d4f6f97d81cf03baca6dfbd7a17b3

File Size

303 MB

Submitted File Name

Multiome_ATAC_RP009_G6_L006_P057_S14_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

39579348

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3263SQDP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples