IGVFFI3588PLNI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9259SQOO(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP008_G2_P057_L004_R3

md5sum

47bade8a9e1fdca078d28d3fe9c35f72

Content MD5sum

c6f8d2afbdf39d81158a60afc7f929de

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_RP008_G2_L002_P057_S2_L004_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

36013201

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5834KBZJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples