IGVFFI3580VRNC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6932ECNS(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X042_G6_P043_L005_I1

md5sum

3e9a7ede23bb450256344b25b44d182e

Content MD5sum

4f5e39134edfa0ad9220e2f01960b537

File Size

387 MB

Submitted File Name

Multiome_ATAC_X042_G6_L006_P043_S24_L005_I1_001.fastq.gz

Checkfiles Version

v20

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

51891728

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1167MABH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples

Attribution

Award

HG012076

Principal Investigator(s)

Ansuman Satpathy

Contact P.I.

Ansuman Satpathy

Lab

Ryan Corces, Gladstone Institute UCSF