IGVFFI3574PQUT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3466DKVY(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G4_P053_L001_R1

md5sum

61c876fe365e619c14cb5d1c31e47093

Content MD5sum

69ec5eff793140161b0718812398a166

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP005_G4_L004_P053_S20_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54494452

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3046HYHX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples