IGVFFI3568SBTV

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI3568SBTV/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3568SBTV",
    "aliases": [
        "ansuman-satpathy:igvf_exp0_atac_10x1_NGS1_r1"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "content_md5sum": "3c3af8c3dd0048db3c682ba8ff4b7b7a",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-07-21T22:16:10.316087+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS7482RDGX/",
        "accession": "IGVFDS7482RDGX",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM2682GVVD/",
                "accession": "IGVFSM2682GVVD",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days, male, Homo sapiens; ... and 21 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 42495063967,
    "flowcell_id": "HJ7GYDSX5",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI3568SBTV/@@download/IGVFFI3568SBTV.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [
        "/tabular-files/IGVFFI9532SPYG/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "lane": 3,
    "loci_list_for": [],
    "maximum_read_length": 50,
    "md5sum": "65003a9fdc594d372753cafd1a3e8c10",
    "mean_read_length": 50,
    "minimum_read_length": 50,
    "quality_metrics": [],
    "read_count": 1369172919,
    "read_names": [
        "Read 1"
    ],
    "release_timestamp": "2025-03-07T01:10:22.456440+00:00",
    "s3_uri": "s3://igvf-files/2024/07/21/1d40d8a4-6e23-4581-bfff-a374ad728109/IGVFFI3568SBTV.fastq.gz",
    "schema_version": "15",
    "seqspecs": [
        "/configuration-files/IGVFFI5540ICZY/"
    ],
    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008637/",
        "status": "released",
        "term_name": "Illumina NovaSeq 6000"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/projects/igvf/Projects/230622_IGVF0_McGinnis/ATAC/ATAC2_S54_L003_R1_001.fastq.gz",
    "summary": "R1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "1d40d8a4-6e23-4581-bfff-a374ad728109"
}