IGVFFI3560NLCL

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI3560NLCL/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3560NLCL",
10    "aliases": [
11        "harinder-singh:multiplexed_perturbation_scRNAseq_20231117_FBHTO_NGS_LAF6401A21_L002_R2"
12    ],
13    "assay_titles": [
14        "scRNA-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012041/",
19        "component": "networks"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "0723e9901972fd3e5b0510685650379d",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-11T19:06:32.739696+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/auxiliary-sets/IGVFDS5558ZQDQ/",
30        "@type": [
31            "AuxiliarySet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS5558ZQDQ",
36        "file_set_type": "cell hashing barcode sequencing",
37        "status": "preview",
38        "summary": "cell hashing barcode sequencing for scRNA-seq"
39    },
40    "file_size": 1567352851,
41    "gene_list_for": [],
42    "href": "/sequence-files/IGVFFI3560NLCL/@@download/IGVFFI3560NLCL.fastq.gz",
43    "illumina_read_type": "R2",
44    "input_file_for": [
45        "/matrix-files/IGVFFI3750AJCL/"
46    ],
47    "integrated_in": [],
48    "lab": {
49        "@id": "/labs/harinder-singh/",
50        "title": "Harinder Singh, University of Pittsburgh"
51    },
52    "lane": 2,
53    "loci_list_for": [],
54    "maximum_read_length": 90,
55    "md5sum": "51863341240341351d6a0560fcad5329",
56    "mean_read_length": 90,
57    "minimum_read_length": 90,
58    "quality_metrics": [],
59    "read_count": 39806588,
60    "s3_uri": "s3://igvf-restricted-files/2025/03/11/d7f93b22-f5cc-47cc-9dfc-52c9a7141db3/IGVFFI3560NLCL.fastq.gz",
61    "schema_version": "15",
62    "seqspecs": [],
63    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
64    "sequencing_platform": {
65        "@id": "/platform-terms/EFO_0008637/",
66        "status": "released",
67        "term_name": "Illumina NovaSeq 6000"
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69    "sequencing_run": 1,
70    "status": "preview",
71    "submitted_by": {
72        "@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
73        "title": "Nicholas Pease"
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75    "submitted_file_name": "/ix/djishnu/Common_Folder/Pease_Data/20231110_PerturbSeq/1_111723_Hsingh_5Pv2_FBHTO_LAF6401A21_S17_L002_R2_001.fastq.gz",
76    "summary": "R2 reads from sequencing run 1",
77    "upload_status": "validated",
78    "uuid": "d7f93b22-f5cc-47cc-9dfc-52c9a7141db3"
79}